NEWS.md

In mmollina/MAPPoly: Genetic Linkage Maps in Autopolyploids

MAPpoly version 0.4.1

• Addressed the --use-LTO installation failure issue

MAPpoly version 0.4.0

• Functions to build maps in individual parents
• Functions to merge individual maps
• Imputation functions based on map
• Functions to edit order interactively
• Fix minor bugs

MAPpoly version 0.3.3

• Fix minor bugs

MAPpoly version 0.3.2

• Added function find_blocks
• Added several utility functions
• Update function filter_individuals
• Update filtering graphics
• Update some color schemes

MAPpoly version 0.3.0

• Added function est_pairwise_rf2 to avoid memory overflow in personal computers when estimating recombination fraction in large number of markers.
• Added Vignette
• Added function 'export_qtlpoly'
• Added function 'filter_individuals'
• Changed the name of function 'calc_homoprob' to 'calc_homologprob'

MAPpoly version 0.2.3

• Added function plot_GIC
• Updated functions est_rf_hmm_sequential and read_fitpoly
• Verification for high-prec system support
• Added LazyDataCompression: xz in DESCRIPTION file

MAPpoly version 0.2.2

• Suggested packages are used conditionally, following §1.1.3.1 of 'Writing R Extensions'.

MAPpoly version 0.2.1

• Added estimation of two-point recombination fraction using genotype probabilities
• Added 'read_fitpoly' function
• New graphical feature in function 'rf_snp_filt'
• Added option to plot large recombination fraction matrix using cell aggregation for a given order
• Added estimation of map distance using the MDSMap package procedure (projects the MDS order onto a single dimension using principal curves)

mmollina/MAPPoly documentation built on March 8, 2024, 2:04 a.m.