get_counts_single_parent: Counts for recombinant classes in a polyploid parent.

In mmollina/MAPPoly: Genetic Linkage Maps in Autopolyploids

Counts for recombinant classes in a polyploid parent.

Description

The conditional probability of a genotype at locus k+1 given the genotype at locus k is ...

Usage

get_counts_single_parent(
  ploidy,
  gen.par.mk1,
  gen.par.mk2,
  gen.prog.mk1,
  gen.prog.mk2
)

Arguments

ploidy	Ploidy level
gen.par.mk1	Genotype of marker mk1 (vector x \in 0, \cdots, m)
gen.par.mk2	Genotype of marker mk2 (vector x \in 0, \cdots, m)
gen.prog.mk1	Dose of marker mk1 on progeny
gen.prog.mk2	Dose of marker mk2 on progeny

Value

S3 object; a list consisting of

counts

counts for each one of the classes

mmollina/MAPPoly documentation built on March 8, 2024, 2:04 a.m.