hexafake: Simulated autohexaploid dataset.

In mmollina/MAPPoly: Genetic Linkage Maps in Autopolyploids

Simulated autohexaploid dataset.

Description

A dataset of a hypothetical autohexaploid full-sib population containing three homology groups

Usage

hexafake

Format

An object of class mappoly.data which contains a list with the following components:

plody

ploidy level = 6

n.ind

number individuals = 300

n.mrk

total number of markers = 1500

ind.names

the names of the individuals

mrk.names

the names of the markers

dosage.p1

a vector containing the dosage in parent P for all n.mrk markers

dosage.p2

a vector containing the dosage in parent Q for all n.mrk markers

chrom

a vector indicating the chromosome each marker belongs. Zero indicates that the marker was not assigned to any chromosome

genome.pos

Physical position of the markers into the sequence

geno.dose

a matrix containing the dosage for each markers (rows) for each individual (columns). Missing data are represented by ploidy_level + 1 = 7

n.phen

There are no phenotypes in this simulation

phen

There are no phenotypes in this simulation

chisq.pval

vector containing p-values for all markers associated to the chi-square test for the expected segregation patterns under Mendelian segregation

mmollina/MAPPoly documentation built on March 8, 2024, 2:04 a.m.