import_phased_maplist_from_polymapR: Import phased map list from polymapR

In mmollina/MAPPoly: Genetic Linkage Maps in Autopolyploids

Import phased map list from polymapR

Description

Function to import phased map lists from polymapR

Usage

import_phased_maplist_from_polymapR(maplist, mappoly.data, ploidy = NULL)

Arguments

maplist	a list of phased maps obtained using function create_phased_maplist from package polymapR
mappoly.data	a dataset used to obtain maplist, converted into class mappoly.data
ploidy	the ploidy level

Details

See examples at https://rpubs.com/mmollin/tetra_mappoly_vignette.

Author(s)

Marcelo Mollinari [e-mail]

References

Bourke PM et al: (2019) PolymapR — linkage analysis and genetic map construction from F1 populations of outcrossing polyploids. _Bioinformatics_ 34:3496–3502. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1093/bioinformatics/bty1002")}

Mollinari, M., and Garcia, A. A. F. (2019) Linkage analysis and haplotype phasing in experimental autopolyploid populations with high ploidy level using hidden Markov models, _G3: Genes, Genomes, Genetics_. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1534/g3.119.400378")}

mmollina/MAPPoly documentation built on March 8, 2024, 2:04 a.m.