Man pages for molepi/DNAmArray
Streamlined workflow for the quality control, normalization and bias-free analysis of Illumina methylation array data - The Leiden approach
| cpgInfo | nearestGenes |
| detectionP | detectionP that accepts NA's |
| DMRfinder | DMR finder |
| getSex.DNAmArray | Determine sex based on X chr methylation status |
| plot_wbcc | Validation plots |
| predict_wbcc | Predict cell-type composition from methylation values |
| preprocessFunnorm.DNAmArray | preprocessFunnormv2 |
| probeFiltering | filter on probe-level: number of beads and zero intensities |
| probeMasking | Cross-reactive and Polymorphic Probe Masking |
| read.metharray.exp.par | construct RGChannelSet in parallel |
| reduce | Extract functional normalized data according to filter data |
| screeplot | Scree plot of the 450k control probe intensities |
| train_wbcc | Train a predictor for cell-type composition |
