getSex.DNAmArray: Determine sex based on X chr methylation status
In molepi/DNAmArray: Streamlined workflow for the quality control, normalization and bias-free analysis of Illumina methylation array data - The Leiden approach
getSex.DNAmArray R Documentation
Determine sex based on X chr methylation status
Description
Determine sex based on X chr methylation status
Usage
getSex.DNAmArray(
beta,
cutbeta = c(0.2, 0.6),
nx = 3000,
array = "450K",
genome = "hg19"
)
Arguments
beta
beta matrix
cutbeta
beta values threshold use values between [0.2-0.6]
nx
number of X chr probes to determine sex is Male default 3000
array
EPIC or 450K
genome
hg19 or hg38
Value
sex prediction
Author(s)
ljsinke
molepi/DNAmArray documentation built on Aug. 24, 2022, 1:42 p.m.
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| getSex.DNAmArray | R Documentation |
Determine sex based on X chr methylation status
Description
Determine sex based on X chr methylation status
Usage
getSex.DNAmArray( beta, cutbeta = c(0.2, 0.6), nx = 3000, array = "450K", genome = "hg19" )
Arguments
beta |
beta matrix |
cutbeta |
beta values threshold use values between [0.2-0.6] |
nx |
number of X chr probes to determine sex is Male default 3000 |
array |
EPIC or 450K |
genome |
hg19 or hg38 |
Value
sex prediction
Author(s)
ljsinke
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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