plotNetworkGraph: Plot a graph from an adjacency list
In molsysbio/STASNet: Fit and Simulate Model from Perturbation Data
Description
Usage
Arguments
Author(s)
See Also
Description
Plot a graph from an adjacency list
Usage
1
plotNetworkGraph(structure, expdes = "", local_values = "")
Arguments
structure
A 2-columns matrix or a ModelStructure object. The network as an adjacency list, the first column is the upstream nodes, the second column the downstream nodes. Or a ModelStructure object as returned by getModelStructure.
expdes
An ExperimentalDesign object. The measured, stimulated and inhibited nodes are highlighted if present. Signalling strengths are indicated in leftshifted edges and inhibitor strengths are denoted in red below the inhibited node.
local_values
A list with entries 'local_response' (A weighted adjacency matrix representing the values of the links) and 'inhibitors' (A list of inhibition values) both compatible with the 'structure' input
Author(s)
Bertram Klinger bertram.klinger@charite.de
See Also
Other Network graph: plotModelGraph
molsysbio/STASNet documentation built on May 29, 2019, 5:45 a.m.
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Description Usage Arguments Author(s) See Also
Description
Plot a graph from an adjacency list
Usage
1 | plotNetworkGraph(structure, expdes = "", local_values = "")
|
Arguments
structure |
A 2-columns matrix or a ModelStructure object. The network as an adjacency list, the first column is the upstream nodes, the second column the downstream nodes. Or a ModelStructure object as returned by getModelStructure. |
expdes |
An ExperimentalDesign object. The measured, stimulated and inhibited nodes are highlighted if present. Signalling strengths are indicated in leftshifted edges and inhibitor strengths are denoted in red below the inhibited node. |
local_values |
A list with entries 'local_response' (A weighted adjacency matrix representing the values of the links) and 'inhibitors' (A list of inhibition values) both compatible with the 'structure' input |
Author(s)
Bertram Klinger bertram.klinger@charite.de
See Also
Other Network graph: plotModelGraph
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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