extractModelCore: Extracts the data, the experimental design and the structure...
In molsysbio/STASNet: Fit and Simulate Model from Perturbation Data

Extracts the data, the experimental design and the structure from the input files

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extractModelCore(model_structure, basal_activity, data_filename,
  var_filename = "", dont_perturb = c(), dont_read = c(),
  MIN_CV = 0.1, DEFAULT_CV = 0.3, rearrange = "no")

`model_structure`	Matrix of links [node1, node2]
`basal_activity`	The node of the structure with a basal activity
`dont_perturb`	Perturbations to be removed for the fit, will not be used nor simulated. (vector of names)
`dont_read`	Readouts to be removed for the fit, will not be used nor simulated. (vector of names)
`MIN_CV`	Minimum coefficient of variation.
`DEFAULT_CV`	Default coefficient of variation to use when none is provided and there are no replicates in the data.
`rearrange`	Whether the rows should be rearranged. "no" to keep the order of the perturbations from the data file, "bystim" to group by stimulations, "byinhib" to group by inhibitions.
`datas`	Experimental data under the MIDAS format. See extractMIDAS.
`var_file`	Variation file name under MIDAS format or "" to compute an error from the data. See extractMIDAS.