plotParameters: Plot parameters

In molsysbio/STASNet: Fit and Simulate Model from Perturbation Data

Description

Generic function to plot parameters

Plot parameters from aggregated direct paths. The margins are increased to c(10, 4, 4, 2) but can be increased more by specifying larger margins in 'par' before calling the function.

Usage

plotParameters(aggregated_paths, lim = 2, repar = TRUE,
  resetpar = TRUE, vertical = TRUE)

plotParameters(aggregated_paths, lim = 2, repar = TRUE,
  resetpar = TRUE, vertical = TRUE)

Arguments

aggregated_paths	Aggregated direct paths as returned by aggregateDirectPaths
lim	The absolute limit of the plot y-axis, the parameters with value falling outside the range [-lim, lim] will have their value displayed at the edge of the plotting area.
repar	Whether par() should be called, use FALSE for the function to work with layouts.
resetpar	Whether par() should be called after the plotting to restore the previous plot parameters
vertical	Whether the parametres should be organised vertically (TRUE) or horizontally (FALSE)
x	A Model object
...	Plot parameters

See Also

plotParameters.modelGroup

aggregateDirectPaths

molsysbio/STASNet documentation built on May 29, 2019, 5:45 a.m.