extract_minus: Extract elements on the minus strand from a gtf file.
In monahton/GencodeInterrogator: Data Extraction and Manipulation from the GENCODE Database
View source: R/extract_minus.R
Description
This function takes a gtf file from GENCODE or a dataframe containing extracted introns. It returns as a dataframe a specified element; i.e gene, transcript, exon or intron; that are on the reverse strand
Usage
1
extract_minus(data1, type)
Arguments
data1
The name of the downloaded gtf file from GENCODE website
type
A string that specifies the type of element to be reported
monahton/GencodeInterrogator documentation built on Dec. 24, 2019, 1:31 p.m.
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View source: R/extract_minus.R
Description
This function takes a gtf file from GENCODE or a dataframe containing extracted introns. It returns as a dataframe a specified element; i.e gene, transcript, exon or intron; that are on the reverse strand
Usage
1 | extract_minus(data1, type)
|
Arguments
data1 |
The name of the downloaded gtf file from GENCODE website |
type |
A string that specifies the type of element to be reported |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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