extract_pc: Extract protein-coding genes from basic annotation file
In monahton/GencodeInterrogator: Data Extraction and Manipulation from the GENCODE Database
Description
This function takes a dataframe of basic annotations provided by Gencode as input. (To load the gtf file, check load_gtf function). The function extracts from the dataframe all the protein-coding genes and gives as an output a dataframe in the R Global Environment. The output dataframe includes the gene, transcript and exon annotations.
Usage
1
extract_pc(x)
Arguments
x
The name of the downloaded basic annoation gtf file from GENCODE website
monahton/GencodeInterrogator documentation built on Dec. 24, 2019, 1:31 p.m.
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Description
This function takes a dataframe of basic annotations provided by Gencode as input. (To load the gtf file, check load_gtf function). The function extracts from the dataframe all the protein-coding genes and gives as an output a dataframe in the R Global Environment. The output dataframe includes the gene, transcript and exon annotations.
Usage
1 | extract_pc(x)
|
Arguments
x |
The name of the downloaded basic annoation gtf file from GENCODE website |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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