Man pages for morriso1/tools4RNAseq
Extra Functions For RNAseq Analysis

convert_flybase_id_to_gene_symbolConvert character vector of flybase_ids to character vector...
create_heatmap_from_lcpmCreate a heatmap using the heatmap.2 function from gplots
create_mds_or_pca_plotCreates a MDS or PCA plot by passing GLimma::glMDSPlot output...
creating_gene_setsExtract gene set character vectors from list of character...
differential_expressed_genes_per_contrast_charWrapper function for Limma TopTable function. Returns vector...
differential_expressed_genes_per_contrast_dfWrapper function for Limma TopTable function. Returns...
edit_DGElist_genesAdd extra gene info to DGElist object.
helloHello, World!
multiple_constrast_cameraMultiple contrast wrapper for limma camera function.
multiple_constrast_mroastMultiple contrast wrapper for mroast camera function.
multiple_constrast_roastMultiple contrast roast wrapper function - not mroast
multiple_constrast_top_genesMultiple contrast wrapper to identify differentially...
multiple_reactomePA_save_dotplot_and_csvSave dotplots and csvs from reactome pathway analysis
otto_venn_diagramCreates custom venn diagram based on limma package Venn...
pheatmap_wrapper_functionCreates heatmap using pheatmap function. Can have two rows of...
read_in_csvs_as_list_of_charReading in csvs as list of character vectors.
saving_html_datatables_from_list_of_tblsSaving list of dataframes to html datatables.
scale_extract_gene_set_and_tidy_lcpm_dataScale and tidy data prior to ggplot2 plot e.g. violin plot.
scale_extract_gene_set_and_tidy_lcpm_data_simpleScale and tidy data prior to ggplot2 plot e.g. violin plot....
violinplot_from_tidy_gene_set_dataViolin plot using tidy data
write_list_2_csv_directorySaving list of dataframes to csvs.
morriso1/tools4RNAseq documentation built on July 17, 2021, 3:07 a.m.