convert_flybase_id_to_gene_symbol | Convert character vector of flybase_ids to character vector... |
create_heatmap_from_lcpm | Create a heatmap using the heatmap.2 function from gplots |
create_mds_or_pca_plot | Creates a MDS or PCA plot by passing GLimma::glMDSPlot output... |
creating_gene_sets | Extract gene set character vectors from list of character... |
differential_expressed_genes_per_contrast_char | Wrapper function for Limma TopTable function. Returns vector... |
differential_expressed_genes_per_contrast_df | Wrapper function for Limma TopTable function. Returns... |
edit_DGElist_genes | Add extra gene info to DGElist object. |
hello | Hello, World! |
multiple_constrast_camera | Multiple contrast wrapper for limma camera function. |
multiple_constrast_mroast | Multiple contrast wrapper for mroast camera function. |
multiple_constrast_roast | Multiple contrast roast wrapper function - not mroast |
multiple_constrast_top_genes | Multiple contrast wrapper to identify differentially... |
multiple_reactomePA_save_dotplot_and_csv | Save dotplots and csvs from reactome pathway analysis |
otto_venn_diagram | Creates custom venn diagram based on limma package Venn... |
pheatmap_wrapper_function | Creates heatmap using pheatmap function. Can have two rows of... |
read_in_csvs_as_list_of_char | Reading in csvs as list of character vectors. |
saving_html_datatables_from_list_of_tbls | Saving list of dataframes to html datatables. |
scale_extract_gene_set_and_tidy_lcpm_data | Scale and tidy data prior to ggplot2 plot e.g. violin plot. |
scale_extract_gene_set_and_tidy_lcpm_data_simple | Scale and tidy data prior to ggplot2 plot e.g. violin plot.... |
violinplot_from_tidy_gene_set_data | Violin plot using tidy data |
write_list_2_csv_directory | Saving list of dataframes to csvs. |
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