View source: R/RNAseq_plotting.R
Creates heatmap using pheatmap function. Can have two rows of labels.
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sample_df |
df from DGElist$samples |
x_lcpm |
Count matrix. Usually log transformed. |
gene_set_char |
Gene set as a vector Identifies need to match rownames of loc_exp_lcpm e.g. flybase_ids |
filt_1_quo |
Column name in sample_df. Quosure. Do not quote. |
filt_1_vec |
Vector containing elements to select from filt_1 column of sample_df |
filt_2_quo |
Column name in sample_df. Quosure. Do not quote. |
filt_2_vec |
Vector containing elements to select from filt_2 column of sample_df |
var_to_groupby |
Normally DGElist$samples$group. Normally a Factor |
... |
Passing the dots to pheatmap function. |
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