scale_extract_gene_set_and_tidy_lcpm_data: Scale and tidy data prior to ggplot2 plot e.g. violin plot.

In morriso1/tools4RNAseq: Extra Functions For RNAseq Analysis

Description

Scale and tidy data prior to ggplot2 plot e.g. violin plot.

Usage

scale_extract_gene_set_and_tidy_lcpm_data(
  loc_exp_lcpm,
  groups,
  RNAi,
  treatment,
  sam_ids,
  gene_set_charV
)

Arguments

loc_exp_lcpm	Count matrix. Usually log transformed.
groups	Column of DGElist$samples that contains group info.
RNAi	Column of DGElist$samples that contains RNAi info.
treatment	Column of DGElist$samples that contains treatment info.
sam_ids	Column of DGElist$samples that contains sam_ids info.
gene_set_charV	Gene set as a vector. Identifies need to match rownames of loc_exp_lcpm e.g. flybase_ids

Value

tidy df

morriso1/tools4RNAseq documentation built on July 17, 2021, 3:07 a.m.