scale_extract_gene_set_and_tidy_lcpm_data_simple: Scale and tidy data prior to ggplot2 plot e.g. violin plot....
In morriso1/tools4RNAseq: Extra Functions For RNAseq Analysis
Description
Usage
Arguments
Value
View source: R/RNAseq_plotting.R
Description
Scale and tidy data prior to ggplot2 plot e.g. violin plot. Only using group info.
Usage
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scale_extract_gene_set_and_tidy_lcpm_data_simple(
loc_exp_lcpm,
groups,
sam_ids,
gene_set_charV
)
Arguments
loc_exp_lcpm
Log transformed count matrix.
groups
Column of DGElist$samples that contains group info.
sam_ids
Column of DGElist$samples that contains sam_ids info.
gene_set_charV
Gene set as a vector. Identifies need to match rownames of loc_exp_lcpm e.g. flybase_ids
Value
tidy_df
morriso1/tools4RNAseq documentation built on July 17, 2021, 3:07 a.m.
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Description Usage Arguments Value
View source: R/RNAseq_plotting.R
Description
Scale and tidy data prior to ggplot2 plot e.g. violin plot. Only using group info.
Usage
1 2 3 4 5 6 | scale_extract_gene_set_and_tidy_lcpm_data_simple(
loc_exp_lcpm,
groups,
sam_ids,
gene_set_charV
)
|
Arguments
loc_exp_lcpm |
Log transformed count matrix. |
groups |
Column of DGElist$samples that contains group info. |
sam_ids |
Column of DGElist$samples that contains sam_ids info. |
gene_set_charV |
Gene set as a vector. Identifies need to match rownames of loc_exp_lcpm e.g. flybase_ids |
Value
tidy_df
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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