Description Usage Arguments Value
View source: R/RNAseq_plotting.R
Create a heatmap using the heatmap.2 function from gplots
1 2 3 4 5 6 7 8 9 | create_heatmap_from_lcpm(
loc_exp_lcpm,
groups,
sam_ids,
gene_set_charV,
reg_express = "LacZRNAi",
col_cell = NA,
...
)
|
loc_exp_lcpm |
Log transformed count matrix. |
groups |
Column of DGElist$samples that contains group info. |
sam_ids |
Column of DGElist$samples that contains sam_id info. |
gene_set_charV |
Gene set as a vector. Identifies need to match rownames of loc_exp_lcpm e.g. flybase_ids |
reg_express |
REGEX expression to identify columns of groups to include in heatmap |
col_cell |
Vector of colors to label each of the sam_id columns in the heatmap |
... |
Passing the dots to heatmap.2 function. |
plot
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