create_heatmap_from_lcpm: Create a heatmap using the heatmap.2 function from gplots

Description Usage Arguments Value

View source: R/RNAseq_plotting.R

Description

Create a heatmap using the heatmap.2 function from gplots

Usage

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create_heatmap_from_lcpm(
  loc_exp_lcpm,
  groups,
  sam_ids,
  gene_set_charV,
  reg_express = "LacZRNAi",
  col_cell = NA,
  ...
)

Arguments

loc_exp_lcpm

Log transformed count matrix.

groups

Column of DGElist$samples that contains group info.

sam_ids

Column of DGElist$samples that contains sam_id info.

gene_set_charV

Gene set as a vector. Identifies need to match rownames of loc_exp_lcpm e.g. flybase_ids

reg_express

REGEX expression to identify columns of groups to include in heatmap

col_cell

Vector of colors to label each of the sam_id columns in the heatmap

...

Passing the dots to heatmap.2 function.

Value

plot


morriso1/tools4RNAseq documentation built on July 17, 2021, 3:07 a.m.