Man pages for mrc-ide/PlasmoMAPI
Mapping Plasmodium Spatial Connectivity from Genetic Data
| assign_map | Assign edges to the hex grid |
| check_PlasmoMAPI_loaded | Check that PlasmoMAPI package has loaded successfully |
| col_hotcold | Red to blue colours |
| create_map | Create map composed of hex tiles |
| get_barrier_intersect | Get distance between points taking into account barriers |
| get_ellipse | Calculate ellipse polygon coordinates from foci and... |
| get_significant_hexes | Get significant hexes |
| get_spatial_distance | Get great circle distance between spatial points |
| is.pm_project | Determine if object is of class pm_project |
| is.pm_sim | Determine if object is of class pm_sim |
| load_coords | Load coordinates of sampling locations into PlasmoMAPI... |
| load_data | Load pairwise data into PlasmoMAPI project |
| lonlat_to_bearing | Calculate great circle distance and bearing between... |
| overlay_points | Add points to dynamic map |
| pipe | Pipe operator |
| PlasmoMAPI | PlasmoMAPI |
| plot_coverage | Plot hex coverage |
| plot_daily_states | Plot daily counts of each host state from simulation |
| plot_dist | Plot pairwise spatial distance against loaded statistic |
| plot_ellipses | Plot network of nodes and ellipses |
| plot_leaflet | Interactive hex map of PlasmoMAPI output |
| plot_map | Plot hex map of PlasmoMAPI output |
| plot_network | Plot network of nodes and edges |
| pm_analysis | Perform PlasmoMAPI analysis |
| pm_file | Import file |
| pm_project | Define empty PlasmoMAPI project |
| print_full | Print unclassed object |
| sim_falciparum | Simulate genetic data from simple P. falciparum model |
