Files in mrc-ide/PlasmoMAPI

Mapping Plasmodium Spatial Connectivity from Genetic Data

.DS_Store

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

PlasmoMAPI.Rproj

R/PlasmoMAPI.R R/RcppExports.R R/assertions_v8.R R/data.R R/main.R R/misc.R R/plot.R R/pm_project.R R/pm_sim.R R/simulation.R R/utils.R README.md

R_ignore/.DS_Store

R_ignore/web_images/.DS_Store

R_ignore/web_images/main_page.pdf

_pkgdown.yml

appveyor.yml

docs/404.html

docs/LICENSE-text.html

docs/articles/basic_tutorial.html

docs/articles/basic_tutorial_files/Proj4Leaflet-1.0.1/proj4-compressed.js

docs/articles/basic_tutorial_files/Proj4Leaflet-1.0.1/proj4leaflet.js

docs/articles/basic_tutorial_files/accessible-code-block-0.0.1/empty-anchor.js

docs/articles/basic_tutorial_files/figure-html/unnamed-chunk-5-1.png

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docs/articles/basic_tutorial_files/figure-html/unnamed-chunk-8-1.png

docs/articles/basic_tutorial_files/htmlwidgets-1.5.1/htmlwidgets.js

docs/articles/basic_tutorial_files/jquery-1.12.4/jquery.min.js

docs/articles/basic_tutorial_files/leaflet-1.3.1/images/layers-2x.png

docs/articles/basic_tutorial_files/leaflet-1.3.1/images/layers.png

docs/articles/basic_tutorial_files/leaflet-1.3.1/images/marker-icon-2x.png

docs/articles/basic_tutorial_files/leaflet-1.3.1/images/marker-icon.png

docs/articles/basic_tutorial_files/leaflet-1.3.1/images/marker-shadow.png

docs/articles/basic_tutorial_files/leaflet-1.3.1/leaflet.css

docs/articles/basic_tutorial_files/leaflet-1.3.1/leaflet.js

docs/articles/basic_tutorial_files/leaflet-binding-2.0.3/leaflet.js

docs/articles/basic_tutorial_files/leaflet-providers-1.9.0/leaflet-providers_1.9.0.js

docs/articles/basic_tutorial_files/leaflet-providers-plugin-2.0.3/leaflet-providers-plugin.js

docs/articles/basic_tutorial_files/leafletfix-1.0.0/leafletfix.css

docs/articles/basic_tutorial_files/rstudio_leaflet-1.3.1/images/1px.png

docs/articles/basic_tutorial_files/rstudio_leaflet-1.3.1/rstudio_leaflet.css

docs/articles/index.html

docs/articles/installation.html

docs/articles/installation_files/accessible-code-block-0.0.1/empty-anchor.js

docs/articles/range_limited_analysis.html

docs/articles/range_limited_analysis_files/accessible-code-block-0.0.1/empty-anchor.js

docs/articles/range_limited_analysis_files/figure-html/unnamed-chunk-4-1.png

docs/articles/range_limited_analysis_files/figure-html/unnamed-chunk-6-1.png

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docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/PlasmoMAPI.html

docs/reference/assign_map.html

docs/reference/calc_simple_hex_values.html

docs/reference/check_PlasmoMAPI_loaded.html

docs/reference/col_hotcold.html

docs/reference/create_map.html

docs/reference/get_barrier_intersect.html

docs/reference/get_ellipse.html

docs/reference/get_significant_hexes.html

docs/reference/get_spatial_distance.html

docs/reference/index.html

docs/reference/is.pm_project.html

docs/reference/is.pm_sim.html

docs/reference/load_coords.html

docs/reference/load_data.html

docs/reference/lonlat_to_bearing.html

docs/reference/overlay_points.html

docs/reference/pipe.html

docs/reference/plot_coverage.html

docs/reference/plot_daily_states.html

docs/reference/plot_dist.html

docs/reference/plot_ellipses.html

docs/reference/plot_leaflet.html

docs/reference/plot_map.html

docs/reference/plot_network.html

docs/reference/pm_analysis.html

docs/reference/pm_file.html

docs/reference/pm_project.html

docs/reference/print_full.html

docs/reference/sim_falciparum.html

docs/reference/square.html

index.md

inst/extdata/DRC_relatedness.rds

inst/extdata/general_idea_data.rds

inst/extdata/mali_demog.rds

man/PlasmoMAPI.Rd man/assign_map.Rd man/check_PlasmoMAPI_loaded.Rd man/col_hotcold.Rd man/create_map.Rd man/get_barrier_intersect.Rd man/get_ellipse.Rd man/get_significant_hexes.Rd man/get_spatial_distance.Rd man/is.pm_project.Rd man/is.pm_sim.Rd man/load_coords.Rd man/load_data.Rd man/lonlat_to_bearing.Rd man/overlay_points.Rd man/pipe.Rd man/plot_coverage.Rd man/plot_daily_states.Rd man/plot_dist.Rd man/plot_ellipses.Rd man/plot_leaflet.Rd man/plot_map.Rd man/plot_network.Rd man/pm_analysis.Rd man/pm_file.Rd man/pm_project.Rd man/print_full.Rd man/sim_falciparum.Rd

src/.DS_Store

src/.gitignore

src/RcppExports.cpp

src/Sampler_v3.cpp

src/Sampler_v3.h

src/array.cpp

src/array.h

src/main.cpp

src/main.h

src/misc_v9.cpp

src/misc_v9.h

src/probability_v10.cpp

src/probability_v10.h

src/sim.Dispatcher.cpp

src/sim.Dispatcher.h

src/sim.Host.cpp

src/sim.Host.h

src/sim.Mosquito.cpp

src/sim.Mosquito.h

src/sim.Parameters.cpp

src/sim.Parameters.h

src/utils.cpp

src/utils.h

tests/testthat.R tests/testthat/test-assertions_v8.R tests/testthat/test-main.R tests/testthat/test-plot.R

vignettes/.gitignore

vignettes/basic_tutorial.Rmd vignettes/installation.Rmd vignettes/range_limited_analysis.Rmd

mrc-ide/PlasmoMAPI documentation built on Oct. 1, 2020, 9:41 a.m.