plot_network: Plot network of nodes and edges

In mrc-ide/PlasmoMAPI: Mapping Plasmodium Spatial Connectivity from Genetic Data

Description

Produce a simple plot of nodes connected by all pairwise edges, where edge colours correspond to statistical distances. Edges with NA values are not plotted.

Usage

plot_network(
  proj,
  col_scale = rev(PlasmoMAPI::col_hotcold()),
  zlim = NULL,
  node_size = 2,
  edge_size = 1,
  base_plot = NULL
)

Arguments

proj	object of class pm_project.
col_scale	the colour scale to use.
zlim	the limits of the colour scale. If NULL then these limits are chosen automatically.
node_size, edge_size	the plotted size of nodes and edges.
base_plot	optional base plot (object of class ggplot) on which this function builds. If NULL then a simple empty plot is used.

mrc-ide/PlasmoMAPI documentation built on Oct. 1, 2020, 9:41 a.m.