mrc-ide/dust
Iterate Multiple Realisations of Stochastic Models

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Iterate Multiple Realisations of Stochastic Models

.Rbuildignore
.covrignore
.gitattributes
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/make-release.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.github/workflows/version-check.yaml
.gitignore
.hadolint.yaml
.lintr
DESCRIPTION
LICENSE
LICENSE.md
Makefile
NAMESPACE
NEWS.md R/compile.R R/cpp11.R R/cuda.R R/data.R R/dust.R R/dust_generator.R R/examples.R R/interface.R R/metadata.R R/ode_control.R R/openmp.R R/package.R R/rng.R R/rng_distributed.R R/rng_pointer.R R/utils.R R/zzz.R README.md
_pkgdown.yml
buildkite/pipeline.yml
developing.md
docker/Dockerfile
docker/Dockerfile.cuda
docker/Rprofile.site
docker/build
docker/build_cuda
docker/common
docker/compile_gpu_model
docker/push
docker/start
extra/.gitignore
extra/generate.sh
extra/harness.cpp
extra/targets
inst/CITATION
inst/WORDLIST
inst/cuda/dust.cu
inst/cuda/dust.hpp
inst/examples/adjoint/sir.cpp
inst/examples/ode/logistic.cpp
inst/examples/ode/malaria.cpp
inst/examples/ode/parallel.cpp
inst/examples/ode/stochastic.cpp
inst/examples/parallel.cpp
inst/examples/sir.cpp
inst/examples/sirs.cpp
inst/examples/variable.cpp
inst/examples/volatility.cpp
inst/examples/walk.cpp
inst/extdata/malaria_cases.csv
inst/include/dust/adjoint.hpp
inst/include/dust/dust_cpu.hpp
inst/include/dust/filter.hpp
inst/include/dust/filter_state.hpp
inst/include/dust/filter_tools.hpp
inst/include/dust/gpu/call.hpp
inst/include/dust/gpu/cuda.hpp
inst/include/dust/gpu/device_resample.hpp
inst/include/dust/gpu/device_state.hpp
inst/include/dust/gpu/dust_gpu.hpp
inst/include/dust/gpu/filter.hpp
inst/include/dust/gpu/filter_kernels.hpp
inst/include/dust/gpu/filter_state.hpp
inst/include/dust/gpu/gpu_info.hpp
inst/include/dust/gpu/kernels.hpp
inst/include/dust/gpu/launch_control.hpp
inst/include/dust/gpu/types.hpp
inst/include/dust/gpu/utils.hpp
inst/include/dust/interpolate/interpolate.hpp
inst/include/dust/interpolate/spline.hpp
inst/include/dust/ode/control.hpp
inst/include/dust/ode/dust_ode.hpp
inst/include/dust/ode/initial_step_size.hpp
inst/include/dust/ode/solver.hpp
inst/include/dust/ode/statistics.hpp
inst/include/dust/ode/stepper.hpp
inst/include/dust/particle.hpp
inst/include/dust/r/dust.hpp
inst/include/dust/r/gpu.hpp
inst/include/dust/r/gpu_info.hpp
inst/include/dust/r/helpers.hpp
inst/include/dust/r/helpers_ode.hpp
inst/include/dust/r/random.hpp
inst/include/dust/r/utils.hpp
inst/include/dust/random/binomial.hpp
inst/include/dust/random/binomial_gamma_tables.hpp
inst/include/dust/random/cauchy.hpp
inst/include/dust/random/cuda_compatibility.hpp
inst/include/dust/random/density.hpp
inst/include/dust/random/exponential.hpp
inst/include/dust/random/gamma.hpp
inst/include/dust/random/generator.hpp
inst/include/dust/random/hypergeometric.hpp
inst/include/dust/random/math.hpp
inst/include/dust/random/multinomial.hpp
inst/include/dust/random/nbinomial.hpp
inst/include/dust/random/normal.hpp
inst/include/dust/random/normal_box_muller.hpp
inst/include/dust/random/normal_polar.hpp
inst/include/dust/random/normal_ziggurat.hpp
inst/include/dust/random/normal_ziggurat_tables.hpp
inst/include/dust/random/numeric.hpp
inst/include/dust/random/poisson.hpp
inst/include/dust/random/prng.hpp
inst/include/dust/random/random.hpp
inst/include/dust/random/uniform.hpp
inst/include/dust/random/utils.hpp
inst/include/dust/random/version.hpp
inst/include/dust/random/xoroshiro128.hpp
inst/include/dust/random/xoshiro128.hpp
inst/include/dust/random/xoshiro256.hpp
inst/include/dust/random/xoshiro512.hpp
inst/include/dust/random/xoshiro_state.hpp
inst/include/dust/types.hpp
inst/include/dust/utils.hpp
inst/random/openmp/Makefile.in
inst/random/openmp/README.md
inst/random/openmp/configure
inst/random/openmp/rnguse.cpp
inst/random/package/DESCRIPTION
inst/random/package/NAMESPACE
inst/random/package/src/rnguse.cpp
inst/template/DESCRIPTION
inst/template/Makevars
inst/template/Makevars.cuda
inst/template/Makevars.pkg
inst/template/NAMESPACE
inst/template/binomial_gamma_tables.hpp
inst/template/dust.R.template
inst/template/dust.cpp
inst/template/dust.hpp
inst/template/dust_methods.cpp
inst/template/dust_methods.hpp
inst/template/math.hpp
inst/template/normal_ziggurat_tables.hpp
inst/template/version.hpp
man/dust.Rd man/dust_cuda_configuration.Rd man/dust_cuda_options.Rd man/dust_data.Rd man/dust_example.Rd man/dust_generate.Rd man/dust_generator.Rd man/dust_ode_control.Rd man/dust_openmp_support.Rd man/dust_openmp_threads.Rd man/dust_package.Rd man/dust_repair_environment.Rd man/dust_rng.Rd man/dust_rng_distributed.Rd man/dust_rng_pointer.Rd
man/figures/logo.png
scripts/build_vignette
scripts/check_headers
scripts/docs_build
scripts/docs_build_cpp
scripts/docs_push
scripts/remove_examples
scripts/update_dust_generator
scripts/update_dust_math
scripts/update_example
scripts/update_gamma_tables
scripts/update_version
scripts/update_ziggurat_tables
scripts/version_check
sphinx/Doxyfile
sphinx/Makefile
sphinx/conf.py
sphinx/examples/.gitignore
sphinx/examples/Makefile
sphinx/examples/random-jump.cpp
sphinx/examples/random-primitive.cpp
sphinx/examples/random-prng.cpp
sphinx/examples/random-seed.cpp
sphinx/examples/random-simple.cpp
sphinx/examples/random-state.cpp
sphinx/examples/random-univariate.cpp
sphinx/examples/random-version.cpp
sphinx/index.rst
sphinx/random-distributions.rst
sphinx/random-jump.rst
sphinx/random-parallel.rst
sphinx/random-primitive.rst
sphinx/random-r.rst
sphinx/random-seed.rst
sphinx/random-state.rst
sphinx/random-version.rst
sphinx/random.rst
src/Makevars
src/cpp11.cpp
src/densities.cpp
src/dust_rng.cpp
src/dust_rng_pointer.cpp
src/logistic.cpp
src/openmp.cpp
src/sir.cpp
src/sirs.cpp
src/test_cuda_launch_control.cpp
src/test_interpolate.cpp
src/test_rng.cpp
src/tools.cpp
src/variable.cpp
src/volatility.cpp
src/walk.cpp
tests/testthat.R
tests/testthat/examples/init.cpp
tests/testthat/examples/pkg/DESCRIPTION
tests/testthat/examples/pkg/NAMESPACE
tests/testthat/helper-cuda.R tests/testthat/helper-dust.R tests/testthat/helper-filter.R tests/testthat/helper-ode.R tests/testthat/helper-rng.R tests/testthat/test-adjoint.R tests/testthat/test-data.R tests/testthat/test-densities.R tests/testthat/test-example.R tests/testthat/test-filter.R tests/testthat/test-gpu.R tests/testthat/test-interface.R tests/testthat/test-interpolate.R tests/testthat/test-metadata.R tests/testthat/test-multi.R tests/testthat/test-ode-control.R tests/testthat/test-ode-interface.R tests/testthat/test-ode-solver.R tests/testthat/test-ode-state.R tests/testthat/test-openmp.R tests/testthat/test-package.R tests/testthat/test-rng-distributed.R tests/testthat/test-rng-interface.R tests/testthat/test-rng.R tests/testthat/test-utils.R tests/testthat/test-xoshiro.R
tests/testthat/xoshiro-ref/xoroshiro128plus
tests/testthat/xoshiro-ref/xoroshiro128plusplus
tests/testthat/xoshiro-ref/xoroshiro128starstar
tests/testthat/xoshiro-ref/xoshiro128plus
tests/testthat/xoshiro-ref/xoshiro128plusplus
tests/testthat/xoshiro-ref/xoshiro128starstar
tests/testthat/xoshiro-ref/xoshiro256plus
tests/testthat/xoshiro-ref/xoshiro256plusplus
tests/testthat/xoshiro-ref/xoshiro256starstar
tests/testthat/xoshiro-ref/xoshiro512plus
tests/testthat/xoshiro-ref/xoshiro512plusplus
tests/testthat/xoshiro-ref/xoshiro512starstar
vignettes/.gitignore
vignettes/data.Rmd vignettes/design.Rmd vignettes/dust.Rmd vignettes/gpu.Rmd vignettes/multi.Rmd vignettes/rng.Rmd vignettes/rng_algorithms.Rmd vignettes/rng_distributed.Rmd vignettes/rng_package.Rmd vignettes_src/gpu.Rmd vignettes_src/rng_distributed.Rmd vignettes_src/rng_package.Rmd
vignettes_src/rng_pi_dust.cpp
vignettes_src/rng_pi_parallel.cpp
vignettes_src/rng_pi_r.cpp
mrc-ide/dust documentation built on Oct. 14, 2024, 12:57 a.m.

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