probability_isolation: Probability of serial interval
In mrc-ide/hermione: Robust estimation of COVID-19 Serial Interval

Description Usage Arguments Value Author(s)

Probability of serial interval

probability_isolation(
  t,
  nu,
  inf_distr = "dgamma",
  inc_distr = "dgamma",
  inf_params,
  inc_params
)

`t`	observed serial interval
`nu`	onset to isolation of primary case
`inf_distr`	quoted name of the infectious period density function. Defaults to dgamma
`inc_distr`	quoted name of the incubation period density function. Defaults to dgamma
`inf_params`	named list of arguments for infectious period distribution.
`inc_params`	named list of arguments for incubation period distribution.

numeric. Probability of observing the given serial interval given the delay from onset to isolation, the parameters of infectious period distributions and incubation period distributions.

Sangeeta Bhatia

mrc-ide/hermione documentation built on Aug. 15, 2020, 9:16 a.m.