probability_basic: Probability of serial interval as a convolution of...
In mrc-ide/hermione: Robust estimation of COVID-19 Serial Interval
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
Probability of serial interval
Usage
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probability_basic(
t,
inf_distr = "dgamma",
inc_distr = "dgamma",
inf_params,
inc_params
)
Arguments
t
observed serial interval
inf_distr
quoted name of the infectious period
density function. Defaults to dgamma
inc_distr
quoted name of the incubation period
density function. Defaults to dgamma
inf_params
named list of arguments for
infectious period distribution.
inc_params
named list of arguments for
incubation period distribution.
Details
Probability of observing a serial interval t is the convolution of
the distributions of infectious profile and incubation period.
Value
numeric. Probability of observing the given serial
interval given
the parameters of infectious period distributions
and incubation period distributions
Author(s)
Sangeeta Bhatia
Examples
1
2
3
4
5
probability_basic(
10,
inf_params = list(shape = 100, rate = 100),
inc_params = list(shape = 50, rate = 100)
)
mrc-ide/hermione documentation built on Aug. 15, 2020, 9:16 a.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
Probability of serial interval
Usage
1 2 3 4 5 6 7 | probability_basic(
t,
inf_distr = "dgamma",
inc_distr = "dgamma",
inf_params,
inc_params
)
|
Arguments
t |
observed serial interval |
inf_distr |
quoted name of the infectious period density function. Defaults to dgamma |
inc_distr |
quoted name of the incubation period density function. Defaults to dgamma |
inf_params |
named list of arguments for infectious period distribution. |
inc_params |
named list of arguments for incubation period distribution. |
Details
Probability of observing a serial interval t is the convolution of the distributions of infectious profile and incubation period.
Value
numeric. Probability of observing the given serial interval given the parameters of infectious period distributions and incubation period distributions
Author(s)
Sangeeta Bhatia
Examples
1 2 3 4 5 | probability_basic(
10,
inf_params = list(shape = 100, rate = 100),
inc_params = list(shape = 50, rate = 100)
)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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