probability_isolation_offset: Probability of serial interval when primary case has been...

In mrc-ide/hermione: Robust estimation of COVID-19 Serial Interval

Description

Probability of serial interval when primary case has been isolated and in the presence of asymptomatic infectiousness

Usage

probability_isolation_offset(
  t,
  nu,
  offset,
  inf_distr = "dgamma",
  inc_distr = "dgamma",
  inf_params,
  inc_params
)

Arguments

t	observed serial interval
nu	onset to isolation of primary case
offset	days of asymptomatic infectiousness
inf_distr	quoted name of the infectious period density function. Defaults to dgamma
inc_distr	quoted name of the incubation period density function. Defaults to dgamma
inf_params	named list of arguments for infectious period distribution.
inc_params	named list of arguments for incubation period distribution.

Value

numeric probability of observing the given serial interval with the given parameters of infectious period and incubation period distributions

Author(s)

Sangeeta Bhatia

mrc-ide/hermione documentation built on Aug. 15, 2020, 9:16 a.m.