Files in mrc-ide/safir2
Individual-Based Model of COVID Transmission
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/RcppExports.R
R/data.R
R/events_base.R
R/events_exposure.R
R/parameters_squire.R
R/safir2.R
R/utils_events.R
R/utils_parameters.R
R/utils_random.R
R/variables_age.R
R/variables_compartments.R
R/ve_calculations.R
README.md
_pkgdown.yml
codecov.yml
data/iso3c_ages.rda
inst/include/safir2_types.hpp
inst/include/utils_parameters.hpp
man/add_named_listener.Rd
man/attach_event_listeners.Rd
man/create_age_variables.Rd
man/create_compartment_variables.Rd
man/create_continuous_age_variable.Rd
man/create_discrete_age_variable.Rd
man/create_event_scheduler_listener.Rd
man/create_events.Rd
man/create_state_update_listener.Rd
man/create_variables.Rd
man/get_asymptomatic.Rd
man/get_population.Rd
man/get_squire_parameters.Rd
man/get_state_vector.Rd
man/identify_ages_to_adjust.Rd
man/interp_input_par.Rd
man/interpolate_rt.Rd
man/iso3c_ages.Rd
man/make_get_NAT.Rd
man/make_get_age_probabilities.Rd
man/make_get_contact_matrix.Rd
man/make_get_ve_severe.Rd
man/make_get_vector.Rd
man/make_rerlang.Rd
man/make_rexp.Rd
man/safir2.Rd
man/swap_ages.Rd
man/ve_infection_functional_form.Rd
safir2.Rproj
src/.gitignore
src/Makevars
src/RcppExports.cpp
src/utils_parameters.cpp
tests/testthat.R
tests/testthat/test-events_base.R
tests/testthat/test-parameters_squire.R
tests/testthat/test-utils_events.R
tests/testthat/test-utils_parameters.R
tests/testthat/test-utils_random.R
tests/testthat/test-variables_age.R
tests/testthat/test-variables_compartments.R
vignettes/.gitignore
vignettes/contributing.Rmd
