Files in mrc-ide/siR
Individual-based SIR models in R and Rcpp
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/IBM_closed_SIR.R
R/RcppExports.R
R/data.R
R/equilibrium_birth_death_sampling.R
R/equilibrium_demography.R
R/odin_closed_SIR.R
R/open_sir_wrapper.R
R/pipe.R
R/rcpp.R
README.md
create_data/Mali_life_table_example.csv
create_data/create_lifetable_data.R
create_data/mali_life_table_example_raw.csv
data/age_of_death.rda
data/equilibrium_age.rda
man/age_of_death.Rd
man/conditional_lifespan.Rd
man/current_age.Rd
man/days_to_steps.Rd
man/demog_test.Rd
man/draw_equilibrium_age.Rd
man/draw_equilibrium_death_age.Rd
man/draw_sample.Rd
man/equilibrium_age.Rd
man/equilibrium_age_death.Rd
man/equilibrium_age_distribution.Rd
man/format_cpp.Rd
man/get_time.Rd
man/ibm_closed_SIR.Rd
man/infection_probability.Rd
man/lifetable_to_transtion_matrix.Rd
man/odin_closed_sir.Rd
man/open_sir.Rd
man/open_sir_rcpp.Rd
man/pipe.Rd
man/post.Rd
man/prob_death_who_to_annual.Rd
man/rate_to_prob.Rd
man/sample_double.Rd
man/sample_int.Rd
man/set_time.Rd
man/weighted_sample_double.Rd
man/weighted_sample_int.Rd
man/weighted_sample_min_double.Rd
man/weighted_sample_min_int.Rd
man/years_to_steps.Rd
run_code/Compare_closed_SIR.R
run_code/Testing_demography.R
run_code/Timing.R
run_code/Timing2.R
run_code/test_demogcpp.R
run_code/testing_SIR.R
run_code/testing_conditonal_age.R
siR.Rproj
src/.gitignore
src/RcppExports.cpp
src/demog.cpp
src/demog.h
src/demog_equilibrium.cpp
src/demog_equilibrium.h
src/open_sir.cpp
src/open_sir.h
src/person.cpp
src/person.h
src/sample.cpp
src/sample.h
src/time.cpp
src/time.h
tests/testthat.R
tests/testthat/test-IBM_closed_sir.R
tests/testthat/test-conditional_age.R
tests/testthat/test-r-equilibrium.R
tests/testthat/test-sampling.R
tests/testthat/test-time.R
