open_sir: Open sIR
In mrc-ide/siR: Individual-based SIR models in R and Rcpp

Open SIR IBM, implemented internally in c++

1 2	open_sir(N = 1000, days = 100, substep = 1, sigma = 0.003, beta = 0.05, i0 = 10, aod = age_of_death, eq = equilibrium_age)

`N`	Number of individuals
`days`	Number of days
`substep`	Steps per day
`sigma`	Recovery rate
`beta`	Infection rate
`i0`	Initial number of infected
`aod`	Distribution of age of death
`eq`	Equilibrium age distribution

A processed data.frame of model output

mrc-ide/siR documentation built on May 6, 2019, 4:33 p.m.

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