spim_plot_Rt: Plot Rt

In mrc-ide/spimalot: Support for 'sircovid'

Plot Rt

Description

Plot Rt

Usage

spim_plot_Rt(
  dat,
  regions,
  rt_type,
  forecast_until = NULL,
  variant = NULL,
  add_betas = FALSE,
  multistrain = TRUE
)

Arguments

dat	Combined data set
regions	Vector of regions to plot
rt_type	One of the valid Rt types (e.g., eff_Rt_all)
forecast_until	Optional date to forecast till
variant	Variant type (or NULL)
add_betas	Logical, indicating if betas should be added to the plot
multistrain	Logical, indicating if this is a multistrain fit

mrc-ide/spimalot documentation built on Oct. 15, 2024, 12:15 p.m.