projection_plotting: Plot projections against each other

In mrc-ide/squire: SEIR transmission model of COVID-19

Plot projections against each other

Description

Plot projections against each other

Usage

projection_plotting(
  r_list,
  scenarios,
  add_parms_to_scenarios = TRUE,
  var_select = NULL,
  replicates = FALSE,
  summarise = TRUE,
  ci = TRUE,
  q = c(0.025, 0.975),
  summary_f = mean,
  date_0 = Sys.Date(),
  x_var = "t",
  ...
)

Arguments

r_list	List of different projection runs from projections
scenarios	Character vector describing the different scenarios.
add_parms_to_scenarios	Logical. Should the parameters used for the projection runs be added to scenarios. Default = TRUE
var_select	Vector of variable names to plot (default is all)
replicates	Plot replicates
summarise	Logical, add summary line
ci	logical add confidence interval ribbon
q	Quantiles for upper and lower of interval ribbon
summary_f	Function to summarise each compartment passed to the fun argument of stat_summary
date_0	Date of time 0, if specified a date column will be added
x_var	X variable to use for plotting (default is "t", but can be set to, "date", if date_0 provided), which will cause the date to be plotted rather than time.
...	additional arguments passed to format_output

mrc-ide/squire documentation built on Sept. 10, 2022, 1:11 a.m.