dist_and_extract: Calculate distance and extract subjects

In mrmtshmp/ExploratoryDataAnalysis: Make plots for explanatory data analyses

Description

Calculate distance and extract subjects

Usage

dist_and_extract(
  data,
  sufix = "extracted",
  tree_phylo = NULL,
  method = "euclidean",
  type_extr = "Type%in%c(3,4)",
  Name_type = df.Name_type,
  param.UniFrac = c(0, 0.5, 1, "UW")
)

Arguments

data	A matrix to calculate distance
method	Metric of distacnce.
type_extr	Will be passed to ExploratoryDataAnalysis::extract_type function
Name_type	Will be passeed to ExploratoryDataAnalysis::extract_type function
tree	A tree object needed when method="UniFrac"

mrmtshmp/ExploratoryDataAnalysis documentation built on Oct. 6, 2020, 8 a.m.