fitzig.select: Conduct fitZIG analysis (metagenomeSeq paclage) with selected...

In mrmtshmp/ExploratoryDataAnalysis: Make plots for explanatory data analyses

Description

Conduct fitZIG analysis (metagenomeSeq paclage) with selected subpopulation

Usage

fitzig.select(
  obj,
  var.select = Type,
  condition = c(3, 4),
  var.analyze = "ACPA",
  rareTrimming,
  fit.zig.settings
)

Arguments

obj	<object; input> A metagenomeSeq-class object.
var.select	<object> A variable name for selection of subpopulation.
condition	Levels in var.select variable of to be selected sub population.
var.analyze	<character> A variable name for independent variable in analysis model.
rareTrimming	<numeric> Taxa with the lesser number of subjects in which the taxa were detected are trimmed.
fit.zig.settings	<numeric> Pass to fitZig function.

mrmtshmp/ExploratoryDataAnalysis documentation built on Oct. 6, 2020, 8 a.m.