mf.survggplot: Survival analysis on specified SNPs as arguments

In mrmtshmp/ExploratoryDataAnalysis: Make plots for explanatory data analyses

Description

Survival analysis on specified SNPs as arguments

Usage

mf.survggplot(
  data = data_01,
  SNPs = c("rs6755005", "rs10428132"),
  gt = list(c("AA", "GA", "GG"), c("GG", "GT", "TT")),
  gt_levels = list(c("AA", "GA", "GG"), c("GG", "GT", "TT")),
  surv = c("time", "status"),
  cov = NULL
)

Arguments

data	A data.frame-class object with column of SNPs
SNPs	A character vector of SNPs to be included as covariates of Cox PH surv model.
gt	A list of character vectors to specify genotypes of the SNPs. Each vector for each SNP. The order of the vectors should be co with those of argument 'SNPs'.
surv	A charactor vector to specify the colnames of time and status arguments to survival::Surv().
cov	A character vector to specify column for covariate.
ge_levels	A list of character vectors to specify the levels of the genotypes, e.g., c('AA', 'AG', 'GG') or c(0, 1, 2) or c(0, 0, 1).
first	Logical.

mrmtshmp/ExploratoryDataAnalysis documentation built on Oct. 6, 2020, 8 a.m.