Files in ms609/TreeDist
Distances Between Phylogenetic Trees

.Rbuildignore
.covrignore
.gitattributes
.gitignore
.travis.yml
.zenodo.json
CODE_OF_CONDUCT.md CONTRIBUTING.md
DESCRIPTION
NAMESPACE
NEWS.md R/Information.R R/RcppExports.R R/TreeDist-package.R R/lap.R R/median.R R/plot.R R/tree_distance.R R/tree_distance_info.R R/tree_distance_kendall-colijn.R R/tree_distance_mast.R R/tree_distance_mmsi.R R/tree_distance_msd.R R/tree_distance_nni.R R/tree_distance_nye.R R/tree_distance_path.R R/tree_distance_rf.R R/tree_distance_spr.R R/tree_distance_utilities.R R/tree_information.R R/zzz.R README.md
codemeta.json
cran-comments.md
inst/CITATION
inst/REFERENCES.bib
inst/WORDLIST
inst/_pkgdown.yml
inst/apa-old-doi-prefix.csl
inst/preamble.tex
man-roxygen/MRS.R man-roxygen/distReturn.R
man-roxygen/nTipParam.R
man-roxygen/split12Params.R man-roxygen/splits12params.R man-roxygen/splitsParam.R man-roxygen/tree12ListParams.R man-roxygen/tree12Params.R man/AllSplitPairings.Rd man/CalculateTreeDistance.Rd man/ClusteringEntropy.Rd man/CompareAll.Rd man/Entropy.Rd man/GeneralizedRF.Rd man/JaccardRobinsonFoulds.Rd man/KendallColijn.Rd man/LAPJV.Rd man/MASTSize.Rd man/MatchingSplitDistance.Rd man/MeilaVariationOfInformation.Rd man/NNIDist.Rd man/NormalizeInfo.Rd man/NyeSimilarity.Rd man/PathDist.Rd man/ReportMatching.Rd man/Robinson-Foulds.Rd man/SPRDist.Rd man/SplitEntropy.Rd man/SplitSharedInformation.Rd man/SplitsCompatible.Rd man/SplitwiseInfo.Rd man/TreeDist-package.Rd man/TreeDistPlot.Rd man/TreeDistance.Rd man/VisualizeMatching.Rd man/dot-MASTSizeEdges.Rd man/dot-PairMean.Rd man/dot-TreeDistance.Rd man/median.multiPhylo.Rd
src/RcppExports.cpp
src/SplitList.cpp
src/SplitList.h
src/ints.h
src/lap.cpp
src/mast.cpp
src/nni_distance.cpp
src/tree_distance_functions.cpp
src/tree_distances.cpp
src/tree_distances.h
tests/figs/deps.txt
tests/figs/plot-r/collapse-a-node.svg
tests/figs/plot-r/collapse-and-change.svg
tests/figs/plot-r/rf-example.svg
tests/figs/plot-r/test-lc-letters.svg
tests/figs/plot-r/test-uc-letters.svg
tests/figs/plot-r/test-vm.svg
tests/figs/plot-r/test-vmr.svg
tests/figs/plot-r/test-with-space.svg
tests/figs/plot-r/test-without-space.svg
tests/figs/plot-r/vm-matchzeros-false.svg
tests/figs/plot-r/vm-single-splits-plainedges.svg
tests/testthat.R tests/testthat/test-64.R tests/testthat/test-information.R tests/testthat/test-lap.R tests/testthat/test-mast.R tests/testthat/test-median.R tests/testthat/test-plot.R tests/testthat/test-real-data.R tests/testthat/test-tree_distance.R tests/testthat/test-tree_distance_nni.R tests/testthat/test-tree_distance_path.R tests/testthat/test-tree_distance_spr.R tests/testthat/test-tree_distance_utilities.R tests/testthat/test-tree_information.R tests/testthat/test-tree_numbering.R tests/testthat/test-tree_shape.R vignettes/Generalized-RF.Rmd vignettes/Robinson-Foulds.Rmd vignettes/Using-TreeDist.Rmd vignettes/information.Rmd vignettes/using-distances.Rmd
ms609/TreeDist documentation built on Sept. 23, 2020, 3:36 p.m.