In ms609/TreeDist: Calculate and Map Distances Between Phylogenetic Trees
Collections of phylogenetic trees, such as those output by Bayesian or parsimony
analysis, may occupy discrete regions of tree space such that individual
clusters of trees are separated from all other trees by a certain distance.
Finding such islands, and taking their consensus, can be an effective way
of summarising conflicting signal in a phylogenetic dataset [@Silva2021].
# Load required libraries
library("TreeTools", quietly = TRUE)
library("TreeDist")
# Generate a set of trees
trees <- as.phylo(as.TreeNumber(BalancedTree(16)) + 0:100 - 15, 16)
ms609/TreeDist documentation built on June 30, 2024, 7:18 p.m.
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Collections of phylogenetic trees, such as those output by Bayesian or parsimony analysis, may occupy discrete regions of tree space such that individual clusters of trees are separated from all other trees by a certain distance. Finding such islands, and taking their consensus, can be an effective way of summarising conflicting signal in a phylogenetic dataset [@Silva2021].
# Load required libraries library("TreeTools", quietly = TRUE) library("TreeDist") # Generate a set of trees trees <- as.phylo(as.TreeNumber(BalancedTree(16)) + 0:100 - 15, 16)
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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