CompareAllTrees: All distances between each pair of trees

In ms609/TreeDistData: Analysis of Phylogenetic Tree Distance Measures

All distances between each pair of trees

Description

All distances between each pair of trees

Usage

CompareAllTrees(trees, exact = FALSE, slow = TRUE, verbose = FALSE)

Arguments

trees	List of bifurcating trees of class phylo.
exact	Logical specifying whether to calculate exact rearrangement distances.
slow	Logical specifying whether to report distance measures that are slow to calculate (quartet distance and maximum agreement subtree).
verbose	Logical specifying whether to report which calculation is presently being performed.

Author(s)

Martin R. Smith ([e-mail])

See Also

Other pairwise tree distances: AllDists()

Examples

trees <- lapply(rep(8, 5), TreeTools::RandomTree, root = TRUE)
CompareAllTrees(trees)

ms609/TreeDistData documentation built on June 30, 2024, 7:21 p.m.