TreeDistMethods: Method parameters

In ms609/TreeDistData: Analysis of Phylogenetic Tree Distance Measures

Method parameters

Description

Metadata for methods examined in this package.

Usage

tdAbbrevs

tdPlotSequence

tdMdAbbrevs

tdBoxAbbrevs

tdMethods

tdCol

TDFunctions

TDPair

Format

An object of class expression of length 29.

An object of class character of length 22.

An object of class expression of length 29.

An object of class character of length 29.

An object of class character of length 26.

An object of class character of length 29.

An object of class list of length 27.

An object of class list of length 26.

Details

tdAbbrevs lists abbreviations for each method, using expressions to allow formatting of text when plotted.

tdPlotSequence lists the 20 methods discussed in the main article, in the sequence in which they are plotted in figures.

tdMdAbbrevs uses markdown formatting.

tdBoxAbbrevs uses line breaks to fit abbreviations in an approximately square bounding box.

tdCol provides each method with a suitable plotting colour.

TDFunctions lists for each method a function that will calculate the distance between two trees or lists of trees.

TDPair lists for each method a function to calculate the distance between one tree (tr) and another tree (ref).

Source

Scripts used to generate data objects are housed in the data-raw directory.

ms609/TreeDistData documentation built on June 30, 2024, 7:21 p.m.