Files in ms609/TreeDistData
Analysis of Phylogenetic Tree Distance Measures
.Rbuildignore
.covrignore
.gitattributes
.github/workflows/pkgdown.yml
.gitignore
CODE_OF_CONDUCT.md
CONTRIBUTING.md
DESCRIPTION
NAMESPACE
NEWS.md
R/TreeDistData-package.R
R/data.R
R/utilities.R
R/zzz.R
README.md
codemeta.json
data-raw/LinTests.R
data-raw/balance.R
data-raw/bullseyeMorph.R
data-raw/bullseyeMorphDistort.R
data-raw/bullseyeTrees.R
data-raw/distanceDistribution25.R
data-raw/distanceDistribution50.R
data-raw/methods.R
data-raw/pectinateDistances11.R
data-raw/randomTreeDistances.R
data-raw/rtd-kc.R
data-raw/sevenTipDistances.R
data-raw/shapeEffect.R
data-raw/sprDistances.R
data/TDFunctions.rda
data/TDPair.rda
data/balance25.rda
data/balance50.rda
data/bullMoDiInferred.rda
data/bullMoDiScores.rda
data/bullseyeMorphInferred.rda
data/bullseyeMorphScores.rda
data/bullseyeTrees.rda
data/distanceDistribution25.rda
data/distanceDistribution50.rda
data/linTestOneResults.rda
data/linTestSPRResults.rda
data/linTestTwoResults.rda
data/pectinateDistances11.rda
data/randomTreeDistances.rda
data/randomTreePairs25.rda
data/randomTreePairs50.rda
data/sevenTipDistances.rda
data/shapeEffect.rda
data/sprDistances.rda
data/tdAbbrevs.rda
data/tdBoxAbbrevs.rda
data/tdCol.rda
data/tdMdAbbrevs.rda
data/tdMethods.rda
data/tdPlotSequence.rda
inst/CITATION
inst/REFERENCES.bib
inst/WORDLIST
inst/_pkgdown.yml
man-roxygen/MRS.R
man-roxygen/allDistMethods.R
man-roxygen/dataRaw.R
man-roxygen/methodRefs.R
man-roxygen/methodsTested.R
man-roxygen/seeVignette.R
man/AllDists.Rd
man/CompareAllTrees.Rd
man/TreeDistCol.Rd
man/TreeDistData-package.Rd
man/TreeDistMethods.Rd
man/bullseye.Rd
man/distanceDistributions.Rd
man/dot-TDDTable.Rd
man/linTests.Rd
man/randomTreeDistances.Rd
man/randomTreePairs.Rd
man/sevenTipDistances.Rd
man/shapeEffect.Rd
man/sprDistances.Rd
man/treeBalance.Rd
tests/testthat.R
tests/testthat/test-data.R
tests/testthat/test-rootedness.R
tests/testthat/test-utilities.R
vignettes/01-length-of-move.Rmd
vignettes/02-leaves-moved.Rmd
vignettes/03-moves-made.Rmd
vignettes/04-saturation-and-sensitivity.Rmd
vignettes/05-tree-shape.Rmd
vignettes/06-lin-cluster-recovery.Rmd
vignettes/07-bullseye.Rmd
vignettes/08-spr-walking.Rmd
vignettes/09-expected-similarity.Rmd
vignettes/10-timing.Rmd
vignettes/11-correlation.Rmd
