ms609/TreeSearch: Phylogenetic Tree Search Using Custom Optimality Criteria

Searches for phylogenetic trees that are optimal using a user-defined criterion. Implements Profile Parsimony (Faith and Trueman, 2001) <doi:10.1080/10635150118627>, and Successive Approximations (Farris, 1969) <doi:10.2307/2412182>. Handles inapplicable data using the algorithm of Brazeau, Guillerme and Smith (2019) <doi:10.1093/sysbio/syy083>.

Getting started

Package details

Maintainer
LicenseGPL (>= 3)
Version0.2.1
URL https://github.com/ms609/TreeSearch
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("ms609/TreeSearch")
ms609/TreeSearch documentation built on Dec. 8, 2018, 4:23 p.m.