cSPR: 'cSPR()' expects a tree rooted on a single tip.
In ms609/TreeSearch: Phylogenetic Analysis with Discrete Character Data
cSPR R Documentation
cSPR() expects a tree rooted on a single tip.
Description
cSPR() expects a tree rooted on a single tip.
Usage
cSPR(tree, whichMove = NULL)
Arguments
tree
A tree of class phylo.
whichMove
Integer specifying which SPR move index to perform.
Author(s)
Martin R. Smith
(martin.smith@durham.ac.uk)
Examples
tree <- TreeTools::BalancedTree(8)
# Tree must be rooted on leaf
tree <- TreeTools::RootTree(tree, 1)
# Random rearrangement
cSPR(tree)
# Specific rearrangement
cSPR(tree, 9)
ms609/TreeSearch documentation built on Sept. 8, 2024, 3:26 a.m.
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| cSPR | R Documentation |
cSPR() expects a tree rooted on a single tip.
Description
cSPR() expects a tree rooted on a single tip.
Usage
cSPR(tree, whichMove = NULL)
Arguments
tree |
A tree of class |
whichMove |
Integer specifying which SPR move index to perform. |
Author(s)
Martin R. Smith (martin.smith@durham.ac.uk)
Examples
tree <- TreeTools::BalancedTree(8)
# Tree must be rooted on leaf
tree <- TreeTools::RootTree(tree, 1)
# Random rearrangement
cSPR(tree)
# Specific rearrangement
cSPR(tree, 9)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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