Files in ms609/TreeSearch
Phylogenetic Tree Search Using Custom Optimality Criteria

.Rbuildignore
.gitattributes
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md R/Bootstrap.R R/Fitch.R R/NNI.R R/Ratchet.R R/SPR.R R/Sectorial.R R/SuccessiveApproximations.R R/TBR.R R/TreeSearch.R R/data.R R/helper_functions.R R/phylo.R R/tree_rearrangement.R README.md cran-comments.md
data/Lobo.RData
man-roxygen/LoboMods.r man-roxygen/datasetParam.r man-roxygen/edgeToBreakParam.R man-roxygen/mergeEdgesParam.R man-roxygen/preorderTreeParam.r man-roxygen/treeChild.R man-roxygen/treeParam.r man-roxygen/treeParent.r man-roxygen/treeScorerDots.r man-roxygen/treeScorerParam.r man-roxygen/verbosityParam.r man/AddTip.Rd man/AllAncestors.Rd man/AncestorEdge.Rd man/BootstrapTree.Rd man/BootstrapWeightings.Rd man/C_Fitch.Rd man/C_Fitch_Score.Rd man/C_Fitch_Steps.Rd man/C_node_depth.Rd man/CladeSizes.Rd man/Cladewise.Rd man/DescendantEdges.Rd man/DoSectorial.Rd man/EdgeAncestry.Rd man/EnforceOutgroup.Rd man/Fitch.Rd man/ListToMatrix.Rd man/Lobo.data.Rd man/Lobo.phy.Rd man/NJTree.Rd man/NNI.Rd man/NeworderPhylo.Rd man/NeworderPruningwise.Rd man/OrderEdgesNumberNodes.Rd man/RandomTree.Rd man/Ratchet.Rd man/RearrangeTree.Rd man/Renumber.Rd man/RenumberTips.Rd man/RenumberTree.Rd man/SPR.Rd man/SampleOne.Rd man/SectorHasData.Rd man/Sectorial.Rd man/SingleTaxonTree.Rd man/Suboptimality.Rd man/Subtree.Rd man/SuccessiveApproximations.Rd man/SuccessiveWeights.Rd man/TBR.Rd man/TBRWarning.Rd man/TipsAreNames.Rd man/TreeSearch.Rd
src/TreeSearch-init.c
src/ape_reorder.h
src/phangorn_fitch.h
src/renumber_tree.h
tests/testthat.R tests/testthat/test-fitch.R tests/testthat/test-tree-functions.R tests/testthat/test-tree-rearrange.R tests/testthat/test-tree-rearranged-numbering.R tests/testthat/test-tree-search.R
ms609/TreeSearch documentation built on Nov. 29, 2017, 8:24 a.m.