R/RcppExports.R

In ms609/TreeSearch: Phylogenetic Analysis with Discrete Character Data

# Generated by using Rcpp::compileAttributes() -> do not edit by hand
# Generator token: 10BE3573-1514-4C36-9D1C-5A225CD40393

preorder_morphy <- function(edge, MorphyHandl) {
    .Call(`_TreeSearch_preorder_morphy`, edge, MorphyHandl)
}

preorder_morphy_by_char <- function(edge, MorphyHandls) {
    .Call(`_TreeSearch_preorder_morphy_by_char`, edge, MorphyHandls)
}

morphy_iw <- function(edge, MorphyHandls, weight, minScore, sequence, concavity, target) {
    .Call(`_TreeSearch_morphy_iw`, edge, MorphyHandls, weight, minScore, sequence, concavity, target)
}

morphy_profile <- function(edge, MorphyHandls, weight, sequence, profiles, target) {
    .Call(`_TreeSearch_morphy_profile`, edge, MorphyHandls, weight, sequence, profiles, target)
}

nni <- function(edge, randomEdge, whichSwitch) {
    .Call(`_TreeSearch_nni`, edge, randomEdge, whichSwitch)
}

spr_moves <- function(edge) {
    .Call(`_TreeSearch_spr_moves`, edge)
}

spr <- function(edge, move) {
    .Call(`_TreeSearch_spr`, edge, move)
}

tbr <- function(edge, move) {
    .Call(`_TreeSearch_tbr`, edge, move)
}

all_spr <- function(edge, break_order) {
    .Call(`_TreeSearch_all_spr`, edge, break_order)
}

all_tbr <- function(edge, break_order) {
    .Call(`_TreeSearch_all_tbr`, edge, break_order)
}