RandomTreeScore: Parsimony score of random postorder tree

In ms609/TreeSearch: Phylogenetic Analysis with Discrete Character Data

Parsimony score of random postorder tree

Description

Parsimony score of random postorder tree

Usage

RandomTreeScore(morphyObj)

Arguments

morphyObj

Object of class morphy, perhaps created with PhyDat2Morphy().

Value

RandomTreeScore() returns the parsimony score of a random tree for the given Morphy object.

Examples

tokens <- matrix(c(
  0, "-", "-", 1, 1, 2,
  0, 1, 0, 1, 2, 2,
  0, "-", "-", 0, 0, 0), byrow = TRUE, nrow = 3L,
  dimnames = list(letters[1:3], NULL))
pd <- TreeTools::MatrixToPhyDat(tokens)
morphyObj <- PhyDat2Morphy(pd)

RandomTreeScore(morphyObj)

morphyObj <- UnloadMorphy(morphyObj)

ms609/TreeSearch documentation built on April 7, 2024, 7:06 p.m.