SingleCharMorphy: Morphy object from single character

In ms609/TreeSearch: Phylogenetic Analysis with Discrete Character Data

Morphy object from single character

Description

Morphy object from single character

Usage

SingleCharMorphy(char, gap = "inapp")

Arguments

char	State of each character at each tip in turn, in a format that will be converted to a character string by paste0(char, ";", collapse="").
gap	An unambiguous abbreviation of inapplicable, ambiguous (= missing), or ⁠extra state⁠, specifying how gaps will be handled.

Value

A pointer to an object of class morphyObj. Don't forget to unload it when you've finished with it.

Author(s)

Martin R. Smith ([e-mail])

See Also

Score a tree: MorphyTreeLength()

Other Morphy API functions: GapHandler(), MorphyErrorCheck(), MorphyWeights(), PhyDat2Morphy(), UnloadMorphy(), is.morphyPtr(), mpl_apply_tipdata(), mpl_attach_rawdata(), mpl_attach_symbols(), mpl_delete_Morphy(), mpl_delete_rawdata(), mpl_first_down_recon(), mpl_first_up_recon(), mpl_get_charac_weight(), mpl_get_gaphandl(), mpl_get_num_charac(), mpl_get_num_internal_nodes(), mpl_get_numtaxa(), mpl_get_symbols(), mpl_init_Morphy(), mpl_new_Morphy(), mpl_second_down_recon(), mpl_second_up_recon(), mpl_set_charac_weight(), mpl_set_num_internal_nodes(), mpl_set_parsim_t(), mpl_translate_error(), mpl_update_lower_root(), mpl_update_tip(), summary.morphyPtr()

Examples

morphyObj <- SingleCharMorphy("-0-0", gap = "Extra")
RandomTreeScore(morphyObj)
morphyObj <- UnloadMorphy(morphyObj)

ms609/TreeSearch documentation built on April 7, 2024, 7:06 p.m.