DESeq2_summary: Produces CA plot
In mshakya/RPiReT: A package that supports PiReT
Description
Usage
Arguments
Value
Description
Produces CA plot
Usage
1
DESeq2_summary(object, alpha, pair1, pair2, feature_name, outdir)
Arguments
object
A DESeq2 object
alpha
alpha
pair1
condition 1
pair2
condition 2
feature_name
name of the feature that is being compared, for example, CDS
outdir
A folder to write all the files
Value
creates a csv file with summary information from deseq2 object with number of genes that up, down, and not significantly different between two conditions.
mshakya/RPiReT documentation built on May 26, 2019, 9:36 a.m.
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Description Usage Arguments Value
Description
Produces CA plot
Usage
1 | DESeq2_summary(object, alpha, pair1, pair2, feature_name, outdir)
|
Arguments
object |
A DESeq2 object |
alpha |
alpha |
pair1 |
condition 1 |
pair2 |
condition 2 |
feature_name |
name of the feature that is being compared, for example, CDS |
outdir |
A folder to write all the files |
Value
creates a csv file with summary information from deseq2 object with number of genes that up, down, and not significantly different between two conditions.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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