map_pathway: Gets pathway maps and paints colors based on expression level...
In mshakya/RPiReT: A package that supports PiReT
Description
Usage
Arguments
Value
Description
Gets pathway maps and paints colors based on expression level of genes
Usage
1
map_pathway(sig_table, type, org_code, out)
Arguments
sig_table
A table file from DESeq2 or edgeR
type
Is it DESeq2 or edgeR?
out
output folder
org
KEGG organism code
Value
A folder containing pathway with fold change value mapped
mshakya/RPiReT documentation built on May 26, 2019, 9:36 a.m.
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Description Usage Arguments Value
Description
Gets pathway maps and paints colors based on expression level of genes
Usage
1 | map_pathway(sig_table, type, org_code, out)
|
Arguments
sig_table |
A table file from DESeq2 or edgeR |
type |
Is it DESeq2 or edgeR? |
out |
output folder |
org |
KEGG organism code |
Value
A folder containing pathway with fold change value mapped
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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