DESeq2_violin: Produces violin plots based on the FPKM/FPM table

Description Usage Arguments Value

Description

Produces violin plots based on the FPKM/FPM table

Usage

1
DESeq2_violin(f_table, exp_desn, outdir, score_type, feature_name)

Arguments

f_table

A csv table with fpm or fpkm, generated using DESeq2FPKM or DESeq2FPM

exp_desn

An experimental design file of PiReT

outdir

A folder to write all the files

score_type

FPM or FPKM

feature_name

name of the feature from gff table that is being counted

Value

creates PDF and PNG figures from FPM/FPKM tables


mshakya/RPiReT documentation built on May 26, 2019, 9:36 a.m.