DESeq2_violin: Produces violin plots based on the FPKM/FPM table
In mshakya/RPiReT: A package that supports PiReT
Description
Usage
Arguments
Value
Description
Produces violin plots based on the FPKM/FPM table
Usage
1
DESeq2_violin(f_table, exp_desn, outdir, score_type, feature_name)
Arguments
f_table
A csv table with fpm or fpkm, generated using DESeq2FPKM or DESeq2FPM
exp_desn
An experimental design file of PiReT
outdir
A folder to write all the files
score_type
FPM or FPKM
feature_name
name of the feature from gff table that is being counted
Value
creates PDF and PNG figures from FPM/FPKM tables
mshakya/RPiReT documentation built on May 26, 2019, 9:36 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Produces violin plots based on the FPKM/FPM table
Usage
1 | DESeq2_violin(f_table, exp_desn, outdir, score_type, feature_name)
|
Arguments
f_table |
A csv table with fpm or fpkm, generated using DESeq2FPKM or DESeq2FPM |
exp_desn |
An experimental design file of PiReT |
outdir |
A folder to write all the files |
score_type |
FPM or FPKM |
feature_name |
name of the feature from gff table that is being counted |
Value
creates PDF and PNG figures from FPM/FPKM tables
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.