gage_analysis: Conducts GAGE analysis using fold change data.

Description Usage Arguments Value

Description

Conducts GAGE analysis using fold change data.

Usage

1
gage_analysis(fc, type, org, out_dir)

Arguments

fc

A table produced by edgeR or DESeq2 that contains fold change information.

type

edgeR or DESeq2.

org

An organism code provided by KEGG.

out_dir

Output directory where tables are written.

Value

Table with list of pathways and their corresponding p-values indicating if they are differently expressed between two conditions


mshakya/RPiReT documentation built on May 26, 2019, 9:36 a.m.