Description Usage Arguments Value
Conducts GAGE analysis using fold change data.
1 | gage_analysis(fc, type, org, out_dir)
|
fc |
A table produced by edgeR or DESeq2 that contains fold change information. |
type |
edgeR or DESeq2. |
org |
An organism code provided by KEGG. |
out_dir |
Output directory where tables are written. |
Table with list of pathways and their corresponding p-values indicating if they are differently expressed between two conditions
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