gage_analysis: Conducts GAGE analysis using fold change data.
In mshakya/RPiReT: A package that supports PiReT
Description
Usage
Arguments
Value
Description
Conducts GAGE analysis using fold change data.
Usage
1
gage_analysis(fc, type, org, out_dir)
Arguments
fc
A table produced by edgeR or DESeq2 that contains fold change information.
type
edgeR or DESeq2.
org
An organism code provided by KEGG.
out_dir
Output directory where tables are written.
Value
Table with list of pathways and their corresponding p-values indicating if they are differently expressed between two conditions
mshakya/RPiReT documentation built on May 26, 2019, 9:36 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Conducts GAGE analysis using fold change data.
Usage
1 | gage_analysis(fc, type, org, out_dir)
|
Arguments
fc |
A table produced by edgeR or DESeq2 that contains fold change information. |
type |
edgeR or DESeq2. |
org |
An organism code provided by KEGG. |
out_dir |
Output directory where tables are written. |
Value
Table with list of pathways and their corresponding p-values indicating if they are differently expressed between two conditions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.