Files in mskcc/facets
Cellular Fraction and Copy Numbers from Tumor Sequencing
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/covr.yaml
.gitignore
DESCRIPTION
NAMESPACE
R/facets-clustersegs.R
R/facets-cncf.R
R/facets-emcncf.R
R/facets-findDipLogR.R
R/facets-procreads.R
R/facets-segment.R
R/facets-wrapper.R
README.md
inst/ChangeLog
inst/WORDLIST
inst/extRfns/readSnpMatrixDT.R
inst/extRfns/readSnpMatrixMSK.R
inst/extRfns/readSnpMatrixMSK.txt
inst/extcode/README.txt
inst/extcode/snp-pileup.cpp
inst/extcode/snp-pileup.h
inst/extdata/stomach.csv.gz
man/emcncf.Rd
man/facets-defunct.Rd
man/facets-internal.Rd
man/facets-package.Rd
man/fitcncf.Rd
man/logRlogORspider.Rd
man/plotSample.Rd
man/preProcSample.Rd
man/procSample.Rd
man/rePreProcSample.Rd
man/readSnpMatrix.Rd
src/000.init.c
src/cbs2rank.f
src/rshared.c
src/scansnp-random.f
tests/facets-eg.R
vignettes/FACETS.Rnw
vignettes/FACETS.bib
vignettes/FACETS.pdf
