mskilab/JaBbA: Infer cancer graph genomes from read depth and junctions
Version 0.0.0.9000

JaBbA simultaneously infers integer copy numbers for genomic segments and their connections based on the read depth and the graph structure defined by the structural variations identified from WGS data. Two essential inputs are 1) a high-density read depth ratio between tumor and normal samples (we also have guidelines for the cases lacking paired normal sequencing) and 2) the putative somatic structural variations. The output is a somatic rearrangement graph representing the integer copy numbers of DNA segments and their connections.

Getting started

Package details

Maintainer
LicenseGPL-2
Version0.0.0.9000
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("mskilab/JaBbA")
mskilab/JaBbA documentation built on July 15, 2018, 9:37 a.m.