Man pages for mskilab/JaBbA
Resconstruct Rearrangment Graphs from Cancer Whole Genome Sequencing

abs2relabs2rel
adj2incadj2inc
all.pathsall.paths
annotate.walksannotate.walks
cbs_stubrun cbs
chromoplexychromoplexy
collapse.pathscollapse.paths
convex.basisconvex.basis
fusionsfusions
gr.tile.mapgr.tile.map
jabba2vcfjabba2vcf
jabba.allelesjabba.alleles
JaBbA.digestJaBbA.digest
jabba.distjabba.dist
jabba.hoodjabba.hood
jabba.meltjabba.melt
jabba.walkjabba.walk
jbaMIPjbaMIP
jbaMIP.allelicjbaMIP.allelic
jbaMIP.processjbaMIP.process
jbaMIP.summarizejbaMIP.summarize
junction.pathsjunction.paths
karyographkaryograph
karyograph_stubkaryograph
karyoMIPkaryoMIP
karyoMIP.to.pathkaryoMIP.to.path
karyotrackkaryo track
loose.endsloose.ends
mmatchmmatch
munlistmunlist
ppgridppgrid
pp.nllpp.nll
proximityproximity
ra_breaksra_breaks
ramip_stubrun ramip
rel2absrel2abs
segstatssegstats is a step in the JaBbA pipeline
sparse_subsetsparse_subset
mskilab/JaBbA documentation built on Dec. 31, 2017, 12:24 a.m.