Infer cancer graph genomes from read depth and junctions

Global functions | |
---|---|

JaBbA | Source code |

JaBbA.digest | Source code |

Rcplex2 | Source code |

all.paths | Source code |

alpha | Source code |

arrstring | Source code |

check.Rcplex.control | Source code |

chr2num | Source code |

collapse.paths | Source code |

constraints | Source code |

convex.basis | Source code |

cplex_customparams | Source code |

esid | Source code |

gr.tile.map | Source code |

jabba.alleles | Source code |

jabba2vcf | Source code |

jabba_stub | Source code |

jbaMIP | Source code |

jmessage | Source code |

karyograph | Source code |

karyograph_stub | Source code |

levapply | Source code |

mipstart | Source code |

munlist | Source code |

plot_ppfit | Source code |

pp.nll | Source code |

ppgrid | Source code |

ra.merge | Source code |

ramip_stub | Source code |

read.junctions | Source code |

read_vcf | Source code |

reciprocal.cycles | Source code |

rel2abs | Source code |

segstats | Source code |

sid | Source code |

sparse_subset | Source code |

split.control.list | Source code |

sv.size | Source code |

toCPXMatrix | Source code |

vaggregate | Source code |

varmeta | Source code |

which.indel | Source code |

write.tab | Source code |

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