API for mskilab/JaBbA
Infer cancer graph genomes from read depth and junctions

Global functions
JaBbA Source code
JaBbA.digest Source code
Rcplex2 Source code
all.paths Source code
alpha Source code
arrstring Source code
check.Rcplex.control Source code
chr2num Source code
collapse.paths Source code
constraints Source code
convex.basis Source code
cplex_customparams Source code
esid Source code
gr.tile.map Source code
jabba.alleles Source code
jabba2vcf Source code
jabba_stub Source code
jbaMIP Source code
jmessage Source code
karyograph Source code
karyograph_stub Source code
levapply Source code
mipstart Source code
munlist Source code
plot_ppfit Source code
pp.nll Source code
ppgrid Source code
ra.merge Source code
ramip_stub Source code
read.junctions Source code
read_vcf Source code
reciprocal.cycles Source code
rel2abs Source code
segstats Source code
sid Source code
sparse_subset Source code
split.control.list Source code
sv.size Source code
toCPXMatrix Source code
vaggregate Source code
varmeta Source code
which.indel Source code
write.tab Source code
mskilab/JaBbA documentation built on Aug. 17, 2018, 11:05 a.m.